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Dive into the research topics where Yann Ponty is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
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CParty: hierarchically constrained partition function of RNA pseudoknots
Gray, M., Trinity, L., Stege, U., Ponty, Y., Will, S. & Jabbari, H., 1 Jan 2025, In: Bioinformatics. 41, 1, btae748.Research output: Contribution to journal › Article › peer-review
Open Access -
CREMSA: Compressed indexing of (ultra) large multiple sequence alignments
Salson, M., Boddaert, A., Gueye, A. B., Bulteau, L., Hernandez - Courbevoie, Y., Marchet, C., Pan, N., Will, S. & Ponty, Y., 1 Jul 2025, In: Bioinformatics. 41, p. i246-i254Research output: Contribution to journal › Article › peer-review
Open Access -
Designing molecular RNA switches with Restricted Boltzmann machines
Fernandez-de-Cossio-Diaz, J., Hardouin, P., Lyonnet du Moutier, F. X., Di Gioacchino, A., Marchand, B., Ponty, Y., Sargueil, B., Monasson, R. & Cocco, S., 1 Dec 2025, In: Nature Communications. 16, 1, 11223.Research output: Contribution to journal › Article › peer-review
Open Access -
IPANEMAP Suite: a pipeline for probing-informed RNA structure modeling
Hardouin, P., Pan, N., Lyonnet Du Moutier, F. X., Chamond, N., Ponty, Y., Will, S. & Sargueil, B., 1 Mar 2025, In: NAR Genomics and Bioinformatics. 7, 1, lqaf028.Research output: Contribution to journal › Article › peer-review
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Old Dog, New Tricks: Exact Seeding Strategy Improves RNA Design Performances
Boury, T., Sidl, L., Hofacker, I. L., Ponty, Y. & Yao, H. T., 1 Jan 2025, Research in Computational Molecular Biology - 29th International Conference, RECOMB 2025, Proceedings. Sankararaman, S. (ed.). Springer Science and Business Media Deutschland GmbH, p. 134-152 19 p. (Lecture Notes in Computer Science; vol. 15647 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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RNA inverse folding can be solved in linear time for structures without isolated stacks or base pairs
Boury, T., Gardelle, S., Bulteau, L. & Ponty, Y., 1 Dec 2025, In: Algorithms for Molecular Biology. 20, 1, 20.Research output: Contribution to journal › Article › peer-review
Open Access -
Color Coding for the Fragment-Based Docking, Design and Equilibrium Statistics of Protein-Binding ssRNAs
Yacoub, T., González-Alemán, R., Leclerc, F., de Beauchêne, I. C. & Ponty, Y., 1 Jan 2024, Research in Computational Molecular Biology - 28th Annual International Conference, RECOMB 2024, Proceedings. Ma, J. (ed.). Springer Science and Business Media Deutschland GmbH, p. 147-163 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14758 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
Open Access -
Developing Complex RNA Design Applications in the Infrared Framework
Yao, H. T., Ponty, Y. & Will, S., 1 Jan 2024, Methods in Molecular Biology. Humana Press Inc., p. 285-313 29 p. (Methods in Molecular Biology; vol. 2726).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Open Access -
Infrared: a declarative tree decomposition-powered framework for bioinformatics
Yao, H. T., Marchand, B., Berkemer, S. J., Ponty, Y. & Will, S., 1 Dec 2024, In: Algorithms for Molecular Biology. 19, 1, 13.Research output: Contribution to journal › Article › peer-review
Open Access -
ISMB 2024 Proceedings
Milenković, T. & Ponty, Y., 1 Jul 2024, In: Bioinformatics. 40, p. i1-i2Research output: Contribution to journal › Review article › peer-review
Open Access