Barvinok's naive algorithm in Distance Geometry

Research output: Contribution to journalArticlepeer-review

Abstract

In 1997, A. Barvinok gave a probabilistic algorithm to derive a near-feasible solution of a quadratically (equation) constrained problem from its semidefinite relaxation. We generalize this algorithm to handle matrix variables instead of vectors, and to handle two-sided inequalities instead of equations. We derive a heuristic for the distance geometry problem, and showcase its computational performance on a set of instances related to protein conformation.

Original languageEnglish
Pages (from-to)476-481
Number of pages6
JournalOperations Research Letters
Volume46
Issue number5
DOIs
Publication statusPublished - 1 Sept 2018

Keywords

  • Concentration of measure
  • Distance geometry
  • Protein structure

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