CPSP-web-tools: A server for 3D lattice protein studies

Martin Mann; Cameron Smith; Mohamad Rabbath; Marlien Edwards; Sebastian Will; Rolf Backofen

doi:10.1093/bioinformatics/btp034

CPSP-web-tools: A server for 3D lattice protein studies

Martin Mann
, Cameron Smith
, Mohamad Rabbath
, Marlien Edwards
, Sebastian Will
, Rolf Backofen

Research output: Contribution to journal › Article › peer-review

Abstract

Summary: Studies on proteins are often restricted to highly simplified models to face the immense computational complexity of the associated problems. Constraint-based protein structure prediction (CPSP) tools is a package of very fast algorithms for ab initio optimal structure prediction and related problems in 3D HP-models [cubic and face centered cubic (FCC)]. Here, we present CPSP-web-tools, an interactive online interface of these programs for their immediate use. They include the first method for the direct prediction of optimal energies and structures in 3D HP side-chain models. This newest extension of the CPSP approach is described here for the first time.

Original language	English
Pages (from-to)	676-677
Number of pages	2
Journal	Bioinformatics
Volume	25
Issue number	5
DOIs	https://doi.org/10.1093/bioinformatics/btp034
Publication status	Published - 1 Mar 2009
Externally published	Yes

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10.1093/bioinformatics/btp034

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abstract = "Summary: Studies on proteins are often restricted to highly simplified models to face the immense computational complexity of the associated problems. Constraint-based protein structure prediction (CPSP) tools is a package of very fast algorithms for ab initio optimal structure prediction and related problems in 3D HP-models [cubic and face centered cubic (FCC)]. Here, we present CPSP-web-tools, an interactive online interface of these programs for their immediate use. They include the first method for the direct prediction of optimal energies and structures in 3D HP side-chain models. This newest extension of the CPSP approach is described here for the first time.",

author = "Martin Mann and Cameron Smith and Mohamad Rabbath and Marlien Edwards and Sebastian Will and Rolf Backofen",

year = "2009",

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T2 - A server for 3D lattice protein studies

AU - Mann, Martin

AU - Smith, Cameron

AU - Rabbath, Mohamad

AU - Edwards, Marlien

AU - Will, Sebastian

AU - Backofen, Rolf

PY - 2009/3/1

Y1 - 2009/3/1

N2 - Summary: Studies on proteins are often restricted to highly simplified models to face the immense computational complexity of the associated problems. Constraint-based protein structure prediction (CPSP) tools is a package of very fast algorithms for ab initio optimal structure prediction and related problems in 3D HP-models [cubic and face centered cubic (FCC)]. Here, we present CPSP-web-tools, an interactive online interface of these programs for their immediate use. They include the first method for the direct prediction of optimal energies and structures in 3D HP side-chain models. This newest extension of the CPSP approach is described here for the first time.

AB - Summary: Studies on proteins are often restricted to highly simplified models to face the immense computational complexity of the associated problems. Constraint-based protein structure prediction (CPSP) tools is a package of very fast algorithms for ab initio optimal structure prediction and related problems in 3D HP-models [cubic and face centered cubic (FCC)]. Here, we present CPSP-web-tools, an interactive online interface of these programs for their immediate use. They include the first method for the direct prediction of optimal energies and structures in 3D HP side-chain models. This newest extension of the CPSP approach is described here for the first time.

UR - https://www.scopus.com/pages/publications/61449237452

U2 - 10.1093/bioinformatics/btp034

DO - 10.1093/bioinformatics/btp034

M3 - Article

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SN - 1367-4803

VL - 25

SP - 676

EP - 677

JO - Bioinformatics

JF - Bioinformatics

IS - 5

ER -

CPSP-web-tools: A server for 3D lattice protein studies

Abstract

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