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Enhanced sampling of multidimensional free-energylandscapes using adaptive biasing forces

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Abstract

We propose an adaptive biasing algorithm aimed at enhancing the sampling of multimodalmeasures by Langevin dynamics. The underlying idea consists in generalizing the standardadaptive biasing force method commonly used in conjunction with molecular dynamics to handle in amore effective fashion multidimensional reaction coordinates. The proposed approach is anticipatedto be particularly useful for reaction coordinates, the components of which are weakly coupled, asilluminated in a mathematical analysis of the long-time convergence of the algorithm. The strengthas well as the intrinsic limitation of the method are discussed and illustrated in two realistic testcases.

Original languageEnglish
Pages (from-to)1673-1695
Number of pages23
JournalSIAM Journal on Applied Mathematics
Volume71
Issue number5
DOIs
Publication statusPublished - 14 Nov 2011

Keywords

  • Adaptivebiasing force
  • Entropy techniques
  • Long-time behavior
  • Nonlinear Fokker-Planck equation

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