TY - JOUR
T1 - FoamQuant
T2 - a Python package for time-resolved 3D image quantification of cellular materials
AU - Schott, Florian
AU - Dollet, Benjamin
AU - Santucci, Stéphane
AU - Raufaste, Christophe
AU - Mokso, Rajmund
N1 - Publisher Copyright:
© Florian Schott et al. 2025.
PY - 2025/9/1
Y1 - 2025/9/1
N2 - X-ray tomography is a well established technique for investigating three-dimensional bulk structures across scales, from macroscopic samples down to their microscopic constituents. The addition of a temporal dimension through dynamic, time-resolved acquisition results in four-dimensional datasets whose complexity often exceeds the processing capabilities of existing image analysis tools. To address the urgent need for a dedicated four-dimensional image analysis platform for cellular materials, we present FoamQuant—a free and open-source software package designed for batch processing and quantitative analysis of large time series of evolving cellular or foam-like materials. FoamQuant enables the extraction of key parameters such as liquid fraction (porosity), individual bubble (pore) volume and offers advanced characterization of mechanical properties, including elastic strain and stress fields as well as individual cell rearrangements. Its user-friendly, modular architecture is demonstrated through two case studies: (i) the orientation of plastic events in a flowing liquid foam, and (ii) bubble tracking in a coarsening albumin foam.
AB - X-ray tomography is a well established technique for investigating three-dimensional bulk structures across scales, from macroscopic samples down to their microscopic constituents. The addition of a temporal dimension through dynamic, time-resolved acquisition results in four-dimensional datasets whose complexity often exceeds the processing capabilities of existing image analysis tools. To address the urgent need for a dedicated four-dimensional image analysis platform for cellular materials, we present FoamQuant—a free and open-source software package designed for batch processing and quantitative analysis of large time series of evolving cellular or foam-like materials. FoamQuant enables the extraction of key parameters such as liquid fraction (porosity), individual bubble (pore) volume and offers advanced characterization of mechanical properties, including elastic strain and stress fields as well as individual cell rearrangements. Its user-friendly, modular architecture is demonstrated through two case studies: (i) the orientation of plastic events in a flowing liquid foam, and (ii) bubble tracking in a coarsening albumin foam.
KW - cellular materials
KW - image analysis
KW - tomography
UR - https://www.scopus.com/pages/publications/105015520475
U2 - 10.1107/S1600577525006629
DO - 10.1107/S1600577525006629
M3 - Article
C2 - 40844313
AN - SCOPUS:105015520475
SN - 0909-0495
VL - 32
SP - 1370
EP - 1377
JO - Journal of Synchrotron Radiation
JF - Journal of Synchrotron Radiation
IS - Pt 5
ER -