Formal Concept Analysis applied to transcriptomic data

Mehwish Alam, Adrien Coulet, Amedeo Napoli, Malika Smaïl-Tabbone

Research output: Contribution to journalConference articlepeer-review

Abstract

Identifying functions shared by genes responsible for cancer is a challenging task. This paper describes the preparation work for applying Formal Concept Analysis (FCA) to complex biological data. We present here a preliminary experiment using these data on a core context with the addition of domain knowledge. The resulting concept lattices are explored and some interesting concepts are discussed. Our study shows how FCA can help the domain experts in the exploration of complex data.

Original languageEnglish
Pages (from-to)339-344
Number of pages6
JournalCEUR Workshop Proceedings
Volume972
Publication statusPublished - 1 Jan 2012
Externally publishedYes
Event9th International Conference on Concept Lattices and Their Applications, CLA 2012 - Fuengirola (Malaga), Spain
Duration: 11 Oct 201214 Oct 2012

Keywords

  • Formal Concept Analysis
  • Knowledge discovery
  • Transcriptomic data

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