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Genome-wide identification of non-coding RNAs in Komagatella pastoris str. GS115

  • Hugo Schneider
  • , Sebastian Bartschat
  • , Gero Doose
  • , Lucas Maciel
  • , Erick Pizani
  • , Marcelo Bassani
  • , Fernando Araripe Torres
  • , Sebastian Will
  • , Tainá Raiol
  • , Marcelo Brígido
  • , Maria Emília Walter
  • , Peter Stadler

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

Abstract

The methylotrophic yeast Komagatella pastoris is a relevant bioengineering platform for protein synthesis. Even though non-coding RNAs are well known to be key players in the control of gene expression no comprehensive annotation of non-coding RNAs has been reported for this species. We combine here published RNA-seq data with a wide array of homology based annotation tools and de novo gene predictions to compile the non-coding RNAs in K. pastoris.

Original languageEnglish
Title of host publicationAdvances in Bioinformatics and Computational Biology - 9th Brazilian Symposium on Bioinformatics, BSB 2014, Proceedings
EditorsSérgio Campos
PublisherSpringer Verlag
Pages115-122
Number of pages8
ISBN (Electronic)9783319124179
DOIs
Publication statusPublished - 1 Jan 2014
Externally publishedYes
Event9th Brazilian Symposium on Bioinformatics, BSB 2014 - Belo Horizonte, Brazil
Duration: 28 Oct 201430 Oct 2014

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume8826
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Conference

Conference9th Brazilian Symposium on Bioinformatics, BSB 2014
Country/TerritoryBrazil
CityBelo Horizonte
Period28/10/1430/10/14

Keywords

  • Komagatella pastoris
  • Long ncRNA
  • Non-coding RNA
  • Pichia pastoris
  • Transcriptome
  • snoRNA

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