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GenRGenS: Software for generating random genomic sequences and structures

  • INRIA Saclay, Laboratoire de Recherche en Informatique (LRI), Université Paris Sud
  • Université Paris-Saclay

Research output: Contribution to journalArticlepeer-review

Abstract

Summary: GenRGenS is a software tool dedicated to randomly generating genomic sequences and structures. It handles several classes of models useful for sequence analysis, such as Markov chains, hidden Markov models, weighted context-free grammars, regular expressions and PROSITE expressions. GenRGenS is the only program that can handle weighted context-free grammars, thus allowing the user to model and to generate structured objects (such as RNA secondary structures) of any given desired size. GenRGenS also allows the user to combine several of these different models at the same time.

Original languageEnglish
Pages (from-to)1534-1535
Number of pages2
JournalBioinformatics
Volume22
Issue number12
DOIs
Publication statusPublished - 15 Jun 2006
Externally publishedYes

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