Abstract
The molecular features that dominate the binding mode of agonists by a broadly tuned olfactory receptor are analyzed through a joint approach combining cell biology, calcium imaging, and molecular modeling. The odorant/receptor affinities, estimated through statistics accrued during molecular dynamics simulations, are in accordance with the experimental ranking. Although in many systems receptors recognize their target through a network of oriented interactions, such as H-bonding, the binding by broadly tuned olfactory receptors is dominated by non-polar terms. We show how such a feature allows chemicals belonging to different chemical families to similarly activate the receptors through compensations of interactions within the binding site.
| Original language | English |
|---|---|
| Pages (from-to) | 4205-4213 |
| Number of pages | 9 |
| Journal | Cellular and Molecular Life Sciences |
| Volume | 69 |
| Issue number | 24 |
| DOIs | |
| Publication status | Published - 1 Dec 2012 |
| Externally published | Yes |
Keywords
- Free energy
- GPCR
- Molecular dynamics
- Odorant
- Structure
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