LocalMove: computing on-lattice fits for biopolymers.

Y. Ponty; R. Istrate; E. Porcelli; P. Clote

doi:10.1093/nar/gkn367

LocalMove: computing on-lattice fits for biopolymers.

Y. Ponty
, R. Istrate
, E. Porcelli
, P. Clote

Boston College

Research output: Contribution to journal › Article › peer-review

Abstract

Given an input Protein Data Bank file (PDB) for a protein or RNA molecule, LocalMove is a web server that determines an on-lattice representation for the input biomolecule. The web server implements a Markov Chain Monte-Carlo algorithm with simulated annealing to compute an approximate fit for either the coarse-grain model or backbone model on either the cubic or face-centered cubic lattice. LocalMove returns a PDB file as output, as well as dynamic movie of 3D images of intermediate conformations during the computation. The LocalMove server is publicly available at http://bioinformatics.bc.edu/clotelab/localmove/.

Original language	English
Pages (from-to)	W216-222
Journal	Nucleic Acids Research
Volume	36
Issue number	Web Server issue
DOIs	https://doi.org/10.1093/nar/gkn367
Publication status	Published - 1 Jan 2008
Externally published	Yes

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title = "LocalMove: computing on-lattice fits for biopolymers.",

abstract = "Given an input Protein Data Bank file (PDB) for a protein or RNA molecule, LocalMove is a web server that determines an on-lattice representation for the input biomolecule. The web server implements a Markov Chain Monte-Carlo algorithm with simulated annealing to compute an approximate fit for either the coarse-grain model or backbone model on either the cubic or face-centered cubic lattice. LocalMove returns a PDB file as output, as well as dynamic movie of 3D images of intermediate conformations during the computation. The LocalMove server is publicly available at http://bioinformatics.bc.edu/clotelab/localmove/.",

author = "Y. Ponty and R. Istrate and E. Porcelli and P. Clote",

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AU - Clote, P.

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AB - Given an input Protein Data Bank file (PDB) for a protein or RNA molecule, LocalMove is a web server that determines an on-lattice representation for the input biomolecule. The web server implements a Markov Chain Monte-Carlo algorithm with simulated annealing to compute an approximate fit for either the coarse-grain model or backbone model on either the cubic or face-centered cubic lattice. LocalMove returns a PDB file as output, as well as dynamic movie of 3D images of intermediate conformations during the computation. The LocalMove server is publicly available at http://bioinformatics.bc.edu/clotelab/localmove/.

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JF - Nucleic Acids Research

IS - Web Server issue

ER -

LocalMove: computing on-lattice fits for biopolymers.

Abstract

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