Freiburg RNA tools: A central online resource for RNA-focused research and teaching

Martin Raden; Syed M. Ali; Omer S. Alkhnbashi; Anke Busch; Fabrizio Costa; Jason A. Davis; Florian Eggenhofer; Rick Gelhausen; Jens Georg; Steffen Heyne; Michael Hiller; Kousik Kundu; Robert Kleinkauf; Steffen C. Lott; Mostafa M. Mohamed; Alexander Mattheis; Milad Miladi; Andreas S. Richter; Sebastian Will; Joachim Wolff; Patrick R. Wright; Rolf Backofen

doi:10.1093/nar/gky329

Freiburg RNA tools: A central online resource for RNA-focused research and teaching

Martin Raden
, Syed M. Ali
, Omer S. Alkhnbashi
, Anke Busch
, Fabrizio Costa
, Jason A. Davis
, Florian Eggenhofer
, Rick Gelhausen
, Jens Georg
, Steffen Heyne
, Michael Hiller
, Kousik Kundu
, Robert Kleinkauf
, Steffen C. Lott
, Mostafa M. Mohamed
, Alexander Mattheis
, Milad Miladi
, Andreas S. Richter
, Sebastian Will
, Joachim Wolff

Patrick R. Wright, Rolf Backofen

Résultats de recherche: Contribution à un journal › Article › Revue par des pairs

Résumé

The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homology search (GLASSgo), sequence-structure alignments (LocARNA, MARNA, CARNA, ExpaRNA), CRISPR repeat classification (CRISPRmap), sequence design (antaRNA, INFO-RNA, SECISDesign), structure aberration evaluation of point mutations (RaSE), and RNA/protein-family models visualization (CMV), and other methods. Open education resources offer interactive visualizations of RNA structure and RNA-RNA interaction prediction as well as basic and advanced sequence alignment algorithms.

langue originale	Anglais
Pages (de - à)	W25-W29
journal	Nucleic Acids Research
Volume	46
Numéro de publication	W1
Les DOIs	https://doi.org/10.1093/nar/gky329
état	Publié - 2 juil. 2018
Modification externe	Oui

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10.1093/nar/gky329

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Raden, M., Ali, S. M., Alkhnbashi, O. S., Busch, A., Costa, F., Davis, J. A., Eggenhofer, F., Gelhausen, R., Georg, J., Heyne, S., Hiller, M., Kundu, K., Kleinkauf, R., Lott, S. C., Mohamed, M. M., Mattheis, A., Miladi, M., Richter, A. S., Will, S., ... Backofen, R. (2018). Freiburg RNA tools: A central online resource for RNA-focused research and teaching. Nucleic Acids Research, 46(W1), W25-W29. https://doi.org/10.1093/nar/gky329

@article{519ed43671764ad292b0532917821a5e,

title = "Freiburg RNA tools: A central online resource for RNA-focused research and teaching",

abstract = "The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homology search (GLASSgo), sequence-structure alignments (LocARNA, MARNA, CARNA, ExpaRNA), CRISPR repeat classification (CRISPRmap), sequence design (antaRNA, INFO-RNA, SECISDesign), structure aberration evaluation of point mutations (RaSE), and RNA/protein-family models visualization (CMV), and other methods. Open education resources offer interactive visualizations of RNA structure and RNA-RNA interaction prediction as well as basic and advanced sequence alignment algorithms.",

author = "Martin Raden and Ali, \{Syed M.\} and Alkhnbashi, \{Omer S.\} and Anke Busch and Fabrizio Costa and Davis, \{Jason A.\} and Florian Eggenhofer and Rick Gelhausen and Jens Georg and Steffen Heyne and Michael Hiller and Kousik Kundu and Robert Kleinkauf and Lott, \{Steffen C.\} and Mohamed, \{Mostafa M.\} and Alexander Mattheis and Milad Miladi and Richter, \{Andreas S.\} and Sebastian Will and Joachim Wolff and Wright, \{Patrick R.\} and Rolf Backofen",

note = "Publisher Copyright: {\textcopyright} 2018 The Author(s).",

year = "2018",

month = jul,

day = "2",

doi = "10.1093/nar/gky329",

language = "English",

volume = "46",

pages = "W25--W29",

journal = "Nucleic Acids Research",

issn = "0305-1048",

number = "W1",

}

Raden, M, Ali, SM, Alkhnbashi, OS, Busch, A, Costa, F, Davis, JA, Eggenhofer, F, Gelhausen, R, Georg, J, Heyne, S, Hiller, M, Kundu, K, Kleinkauf, R, Lott, SC, Mohamed, MM, Mattheis, A, Miladi, M, Richter, AS, Will, S, Wolff, J, Wright, PR & Backofen, R 2018, 'Freiburg RNA tools: A central online resource for RNA-focused research and teaching', Nucleic Acids Research, VOL. 46, Numéro W1, p. W25-W29. https://doi.org/10.1093/nar/gky329

TY - JOUR

T1 - Freiburg RNA tools

T2 - A central online resource for RNA-focused research and teaching

AU - Raden, Martin

AU - Ali, Syed M.

AU - Alkhnbashi, Omer S.

AU - Busch, Anke

AU - Costa, Fabrizio

AU - Davis, Jason A.

AU - Eggenhofer, Florian

AU - Gelhausen, Rick

AU - Georg, Jens

AU - Heyne, Steffen

AU - Hiller, Michael

AU - Kundu, Kousik

AU - Kleinkauf, Robert

AU - Lott, Steffen C.

AU - Mohamed, Mostafa M.

AU - Mattheis, Alexander

AU - Miladi, Milad

AU - Richter, Andreas S.

AU - Will, Sebastian

AU - Wolff, Joachim

AU - Wright, Patrick R.

AU - Backofen, Rolf

PY - 2018/7/2

Y1 - 2018/7/2

N2 - The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homology search (GLASSgo), sequence-structure alignments (LocARNA, MARNA, CARNA, ExpaRNA), CRISPR repeat classification (CRISPRmap), sequence design (antaRNA, INFO-RNA, SECISDesign), structure aberration evaluation of point mutations (RaSE), and RNA/protein-family models visualization (CMV), and other methods. Open education resources offer interactive visualizations of RNA structure and RNA-RNA interaction prediction as well as basic and advanced sequence alignment algorithms.

AB - The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homology search (GLASSgo), sequence-structure alignments (LocARNA, MARNA, CARNA, ExpaRNA), CRISPR repeat classification (CRISPRmap), sequence design (antaRNA, INFO-RNA, SECISDesign), structure aberration evaluation of point mutations (RaSE), and RNA/protein-family models visualization (CMV), and other methods. Open education resources offer interactive visualizations of RNA structure and RNA-RNA interaction prediction as well as basic and advanced sequence alignment algorithms.

UR - https://www.scopus.com/pages/publications/85050886325

U2 - 10.1093/nar/gky329

DO - 10.1093/nar/gky329

M3 - Article

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AN - SCOPUS:85050886325

SN - 0305-1048

VL - 46

SP - W25-W29

JO - Nucleic Acids Research

JF - Nucleic Acids Research

IS - W1

ER -

Freiburg RNA tools: A central online resource for RNA-focused research and teaching

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